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Journal of Biomolecular Screening
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Development of a High Throughput Scintillation Proximity Assay for Hepatitis C Virus NS3 Protease That Reduces the Proportion of Competitive Inhibitors Identified

Anne Fowler

Department of SPA Technology, Amersham Pharmacia Biotech UK Limited, Little Chalfont, Buckinghamshire, England

Molly Price-Jones

Department of SPA Technology, Amersham Pharmacia Biotech UK Limited, Little Chalfont, Buckinghamshire, England

Kelvin Hughes

Department of SPA Technology, Amersham Pharmacia Biotech UK Limited, Little Chalfont, Buckinghamshire, England

John Anson

Department of SPA Technology, Amersham Pharmacia Biotech UK Limited, Little Chalfont, Buckinghamshire, England

Russell Lingham

Merck Research Laboratories, Rahway, NJ

Marvin Schulman

Merck Research Laboratories, Rahway, NJ

A screening assay has been developed for hepatitis C virus (HCV) NS3 protease using the scintillation proximity assay (SPA) technology. The sequence of the peptide substrate used was taken from the site cleaved by the enzyme in the mature nonstructural protein of HCV. The peptide was biotinylated at the N-terminus and tritiated at the C-terminus so that a decrease in signal was detected as a result of enzyme activity.

IC50 values were calculated for the cleaved product, and it was shown that the value obtained was dependent on the substrate concentration used. The effect of substrate concentration on the inhibition of HCV NS3 protease was further highlighted in a mock screening assay, using colored natural product samples, in which the hit rate was altered by a change in substrate concentration. An increase in substrate concentration reduced the proportion of competitive inhibitors identified. This study highlighted the importance of optimizing the components used in SPA assays in order to obtain an assay format valid for high throughput screening.

Journal of Biomolecular Screening, Vol. 5, No. 3, 153-158 (2000)
DOI: 10.1177/108705710000500307


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