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Journal of Biomolecular Screening
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A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays

Ji-Hu Zhang

DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware

Thomas D. Y. Chung

DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware

Kevin R. Oldenburg

DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware

The ability to identify active compounds ("hits") from large chemical libraries accurately and rapidly has been the ultimate goal in developing high-throughput screening (HTS) assays. The ability to identify hits from a particular HTS assay depends largely on the suitability or quality of the assay used in the screening. The criteria or parameters for evaluating the "suitability" of an HTS assay for hit identification are not well defined and hence it still remains difficult to compare the quality of assays directly. In this report, a screening window coefficient, called "Z- factor," is defined. This coefficient is reflective of both the assay signal dynamic range and the data variation associated with the signal measurements, and therefore is suitable for assay quality assessment. The Z-factor is a dimensionless, simple statistical characteristic for each HTS assay. The Z-factor provides a useful tool for comparison and evaluation of the quality of assays, and can be utilized in assay optimization and validation.

Journal of Biomolecular Screening, Vol. 4, No. 2, 67-73 (1999)
DOI: 10.1177/108705719900400206


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Comparison of 3 Cytotoxicity Screening Assays and Their Application to the Selection of Novel Antibacterial Hits
J Biomol Screen, February 1, 2009; 14(2): 142 - 150.
[Abstract] [PDF]


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J Biomol ScreenHome page
V. Unterreiner, Y. Ibig-Rehm, M. Simonen, H. Gubler, and D. Gabriel
Comparison of Variability and Sensitivity between Nuclear Translocation and Luciferase Reporter Gene Assays
J Biomol Screen, January 1, 2009; 14(1): 59 - 65.
[Abstract] [PDF]


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Molecular Cancer TherapeuticsHome page
C. Marchand, W. A. Lea, A. Jadhav, T. S. Dexheimer, C. P. Austin, J. Inglese, Y. Pommier, and A. Simeonov
Identification of phosphotyrosine mimetic inhibitors of human tyrosyl-DNA phosphodiesterase I by a novel AlphaScreen high-throughput assay
Mol. Cancer Ther., January 1, 2009; 8(1): 240 - 248.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
V. Patel, M. Booker, M. Kramer, L. Ross, C. A. Celatka, L. M. Kennedy, J. D. Dvorin, M. T. Duraisingh, P. Sliz, D. F. Wirth, et al.
Identification and Characterization of Small Molecule Inhibitors of Plasmodium falciparum Dihydroorotate Dehydrogenase
J. Biol. Chem., December 12, 2008; 283(50): 35078 - 35085.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
A. E. Grzegorzewicz, Y. Ma, V. Jones, D. Crick, A. Liav, and M. R. McNeil
Development of a microtitre plate-based assay for lipid-linked glycosyltransferase products using the mycobacterial cell wall rhamnosyltransferase WbbL
Microbiology, December 1, 2008; 154(12): 3724 - 3730.
[Abstract] [Full Text] [PDF]


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CVIHome page
G. Li Pira, F. Ivaldi, C. Dentone, E. Righi, V. Del Bono, C. Viscoli, G. Koopman, and F. Manca
Evaluation of Antigen-Specific T-Cell Responses with a Miniaturized and Automated Method
Clin. Vaccine Immunol., December 1, 2008; 15(12): 1811 - 1818.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
M. M.C. van Der Lee, M. Bras, C. J. van Koppen, and G. J.R. Zaman
{beta}-Arrestin Recruitment Assay for the Identification of Agonists of the Sphingosine 1-Phosphate Receptor EDG1
J Biomol Screen, December 1, 2008; 13(10): 986 - 998.
[Abstract] [PDF]


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J Biomol ScreenHome page
D. Patnaik, Jun Xian, M. A. Glicksman, G. D. Cuny, R. L. Stein, and J. M.G. Higgins
Identification of Small Molecule Inhibitors of the Mitotic Kinase Haspin by High-Throughput Screening Using a Homogeneous Time-Resolved Fluorescence Resonance Energy Transfer Assay
J Biomol Screen, December 1, 2008; 13(10): 1025 - 1034.
[Abstract] [PDF]


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J Biomol ScreenHome page
R. Rathore, J. Corr, G. Scott, P. Vollmerhaus, and K. D. Greis
Development of an Inhibitor Screening Platform via Mass Spectrometry
J Biomol Screen, December 1, 2008; 13(10): 1007 - 1013.
[Abstract] [PDF]


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Mol. Pharmacol.Home page
M. Rieck, W. Meissner, S. Ries, S. Muller-Brusselbach, and R. Muller
Ligand-Mediated Regulation of Peroxisome Proliferator-Activated Receptor (PPAR) {beta}/{delta}: A Comparative Analysis of PPAR-Selective Agonists and All-trans Retinoic Acid
Mol. Pharmacol., November 1, 2008; 74(5): 1269 - 1277.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
K. Jayathilaka, S. D. Sheridan, T. D. Bold, K. Bochenska, H. L. Logan, R. R. Weichselbaum, D. K. Bishop, and P. P. Connell
A chemical compound that stimulates the human homologous recombination protein RAD51
PNAS, October 14, 2008; 105(41): 15848 - 15853.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
M. Wolff, S. G. Kauschke, S. Schmidt, and R. Heilker
Activation and Translocation of Glucokinase in Rat Primary Hepatocytes Monitored by High Content Image Analysis
J Biomol Screen, October 1, 2008; 13(9): 837 - 846.
[Abstract] [PDF]


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J Biomol ScreenHome page
M. Kocan, H. B. See, R. M. Seeber, K. A. Eidne, and K. D.G. Pfleger
Demonstration of Improvements to the Bioluminescence Resonance Energy Transfer (BRET) Technology for the Monitoring of G Protein-Coupled Receptors in Live Cells
J Biomol Screen, October 1, 2008; 13(9): 888 - 898.
[Abstract] [PDF]


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J Biomol ScreenHome page
W. E. Severson, M. McDowell, S. Ananthan, D.-H. Chung, L. Rasmussen, M. I. Sosa, E. L. White, J. Noah, and C. B. Jonsson
High-Throughput Screening of a 100,000-Compound Library for Inhibitors of Influenza A Virus (H3N2)
J Biomol Screen, October 1, 2008; 13(9): 879 - 887.
[Abstract] [PDF]


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J Biomol ScreenHome page
K.I. Seyb, E.R. Schuman, J. Ni, M.M. Huang, M.L. Michaelis, and M.A. Glicksman
Identification of Small Molecule Inhibitors of {beta}-Amyloid Cytotoxicity through a Cell-Based High-Throughput Screening Platform
J Biomol Screen, October 1, 2008; 13(9): 870 - 878.
[Abstract] [PDF]


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J Biomol ScreenHome page
G. K.Y. Chan, B. A. Lutterbach, B.-S. Pan, I. Kariv, and A. A. Szewczak
High-Throughput Analysis of HGF-Stimulated Cell Scattering
J Biomol Screen, October 1, 2008; 13(9): 847 - 854.
[Abstract] [PDF]


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Molecular Cancer TherapeuticsHome page
J. R. Chevillet, G. J. Park, A. Bedalov, J. A. Simon, and V. I. Vasioukhin
Identification and characterization of small-molecule inhibitors of hepsin
Mol. Cancer Ther., October 1, 2008; 7(10): 3343 - 3351.
[Abstract] [Full Text] [PDF]


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Molecular Cancer TherapeuticsHome page
L. P. Saunders, A. Ouellette, R. Bandle, W. C. Chang, H. Zhou, R. N. Misra, E. M. De La Cruz, and D. T. Braddock
Identification of small-molecule inhibitors of autotaxin that inhibit melanoma cell migration and invasion
Mol. Cancer Ther., October 1, 2008; 7(10): 3352 - 3362.
[Abstract] [Full Text] [PDF]


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Mol. Pharmacol.Home page
C. Graf, M. Klumpp, M. Habig, P. Rovina, A. Billich, T. Baumruker, B. Oberhauser, and F. Bornancin
Targeting Ceramide Metabolism with a Potent and Specific Ceramide Kinase Inhibitor
Mol. Pharmacol., October 1, 2008; 74(4): 925 - 932.
[Abstract] [Full Text] [PDF]


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Cancer Res.Home page
M. Zheng, S. E. Morgan-Lappe, J. Yang, K. M. Bockbrader, D. Pamarthy, D. Thomas, S. W. Fesik, and Y. Sun
Growth Inhibition and Radiosensitization of Glioblastoma and Lung Cancer Cells by Small Interfering RNA Silencing of Tumor Necrosis Factor Receptor-Associated Factor 2
Cancer Res., September 15, 2008; 68(18): 7570 - 7578.
[Abstract] [Full Text] [PDF]


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Clin. Cancer Res.Home page
I. Prassas, M. Paliouras, A. Datti, and E. P. Diamandis
High-Throughput Screening Identifies Cardiac Glycosides as Potent Inhibitors of Human Tissue Kallikrein Expression: Implications for Cancer Therapies
Clin. Cancer Res., September 15, 2008; 14(18): 5778 - 5784.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
J. A. Trendel, N. Ellis, J. G. Sarver, W. A. Klis, M. Dhananjeyan, C. A. Bykowski, M. D. Reese, and P. W. Erhardt
Catalytically Active Peptidylglycine {alpha}-Amidating Monooxygenase in the Media of Androgen-Independent Prostate Cancer Cell Lines
J Biomol Screen, September 1, 2008; 13(8): 804 - 809.
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J Biomol ScreenHome page
X. Zhao, A. Jones, K. R. Olson, K. Peng, T. Wehrman, A. Park, R. Mallari, D. Nebalasca, S. W. Young, and S.-H. Xiao
A Homogeneous Enzyme Fragment Complementation-Based {beta}-Arrestin Translocation Assay for High-Throughput Screening of G-Protein-Coupled Receptors
J Biomol Screen, September 1, 2008; 13(8): 737 - 747.
[Abstract] [PDF]


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J Biomol ScreenHome page
J. J. Hawes, J. D. Nerva, and K. M. Reilly
Novel Dual-Reporter Preclinical Screen for Antiastrocytoma Agents Identifies Cytostatic and Cytotoxic Compounds
J Biomol Screen, September 1, 2008; 13(8): 795 - 803.
[Abstract] [PDF]


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J Biomol ScreenHome page
A. M. Wiles, D. Ravi, S. Bhavani, and A. J.R. Bishop
An Analysis of Normalization Methods for Drosophila RNAi Genomic Screens and Development of a Robust Validation Scheme
J Biomol Screen, September 1, 2008; 13(8): 777 - 784.
[Abstract] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
R. E. Georgescu, O. Yurieva, S.-S. Kim, J. Kuriyan, X.-P. Kong, and M. O'Donnell
Structure of a small-molecule inhibitor of a DNA polymerase sliding clamp
PNAS, August 12, 2008; 105(32): 11116 - 11121.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
P. Stoilov, C.-H. Lin, R. Damoiseaux, J. Nikolic, and D. L. Black
A high-throughput screening strategy identifies cardiotonic steroids as alternative splicing modulators
PNAS, August 12, 2008; 105(32): 11218 - 11223.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
J. Gao, Y. Xu, Y. Yang, Y. Yang, Z. Zheng, W. Jiang, B. Hong, X. Yan, and S. Si
Identification of Upregulators of Human ATP-Binding Cassette Transporter A1 via High-Throughput Screening of a Synthetic and Natural Compound Library
J Biomol Screen, August 1, 2008; 13(7): 648 - 656.
[Abstract] [PDF]


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J Biomol ScreenHome page
M. Maroto, Y. Fernandez, J. Ortin, F. Pelaez, and M. A. Cabello
Development of an HTS Assay for the Search of Anti-influenza Agents Targeting the Interaction of Viral RNA with the NS1 Protein
J Biomol Screen, August 1, 2008; 13(7): 581 - 590.
[Abstract] [PDF]


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J Biomol ScreenHome page
D. J. Krysan and L. Didone
A High-Throughput Screening Assay for Small Molecules That Disrupt Yeast Cell Integrity
J Biomol Screen, August 1, 2008; 13(7): 657 - 664.
[Abstract] [PDF]


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J Biomol ScreenHome page
J.-J. Yoon, D. Chawla, T. Paal, M. Ndungu, Y. Du, S. Kurtkaya, A. Sun, J. P. Snyder, and R. K. Plemper
High-Throughput Screening--Based Identification of Paramyxovirus Inhibitors
J Biomol Screen, August 1, 2008; 13(7): 591 - 608.
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Nucleic Acids ResHome page
X. D. Zhang, P. F. Kuan, M. Ferrer, X. Shu, Y. C. Liu, A. T. Gates, P. Kunapuli, E. M. Stec, M. Xu, S. D. Marine, et al.
Hit selection with false discovery rate control in genome-scale RNAi screens
Nucleic Acids Res., August 1, 2008; 36(14): 4667 - 4679.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
L. M. Mayr and P. Fuerst
The Future of High-Throughput Screening
J Biomol Screen, July 1, 2008; 13(6): 443 - 448.
[Abstract] [PDF]