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Journal of Biomolecular Screening
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A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays

Ji-Hu Zhang

DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware

Thomas D. Y. Chung

DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware

Kevin R. Oldenburg

DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware

The ability to identify active compounds ("hits") from large chemical libraries accurately and rapidly has been the ultimate goal in developing high-throughput screening (HTS) assays. The ability to identify hits from a particular HTS assay depends largely on the suitability or quality of the assay used in the screening. The criteria or parameters for evaluating the "suitability" of an HTS assay for hit identification are not well defined and hence it still remains difficult to compare the quality of assays directly. In this report, a screening window coefficient, called "Z- factor," is defined. This coefficient is reflective of both the assay signal dynamic range and the data variation associated with the signal measurements, and therefore is suitable for assay quality assessment. The Z-factor is a dimensionless, simple statistical characteristic for each HTS assay. The Z-factor provides a useful tool for comparison and evaluation of the quality of assays, and can be utilized in assay optimization and validation.

Journal of Biomolecular Screening, Vol. 4, No. 2, 67-73 (1999)
DOI: 10.1177/108705719900400206


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Development and Evaluation of a FACS-Based Medium-Throughput Assay for HCV Entry Inhibitors
J Biomol Screen, July 1, 2009; 14(6): 620 - 626.
[Abstract] [PDF]


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J Biomol ScreenHome page
D. L. Roman, S. Ota, and R. R. Neubig
Polyplexed Flow Cytometry Protein Interaction Assay: A Novel High-Throughput Screening Paradigm for RGS Protein Inhibitors
J Biomol Screen, July 1, 2009; 14(6): 610 - 619.
[Abstract] [PDF]


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J. Biol. Chem.Home page
T. Komiyama, J. M. Coppola, M. J. Larsen, M. E. van Dort, B. D. Ross, R. Day, A. Rehemtulla, and R. S. Fuller
Inhibition of Furin/Proprotein Convertase-catalyzed Surface and Intracellular Processing by Small Molecules
J. Biol. Chem., June 5, 2009; 284(23): 15729 - 15738.
[Abstract] [Full Text] [PDF]


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Antimicrob. Agents Chemother.Home page
M. A. Rush, M. L. Baniecki, R. Mazitschek, J. F. Cortese, R. Wiegand, J. Clardy, and D. F. Wirth
Colorimetric High-Throughput Screen for Detection of Heme Crystallization Inhibitors
Antimicrob. Agents Chemother., June 1, 2009; 53(6): 2564 - 2568.
[Abstract] [Full Text] [PDF]


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Antimicrob. Agents Chemother.Home page
M. P. Pereira, J. E. Blanchard, C. Murphy, S. L. Roderick, and E. D. Brown
High-Throughput Screening Identifies Novel Inhibitors of the Acetyltransferase Activity of Escherichia coli GlmU
Antimicrob. Agents Chemother., June 1, 2009; 53(6): 2306 - 2311.
[Abstract] [Full Text] [PDF]


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Antimicrob. Agents Chemother.Home page
L. Cai, E. Balogh, and M. Gochin
Stable Extended Human Immunodeficiency Virus Type 1 gp41 Coiled Coil as an Effective Target in an Assay for High-Affinity Fusion Inhibitors
Antimicrob. Agents Chemother., June 1, 2009; 53(6): 2444 - 2449.
[Abstract] [Full Text] [PDF]


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J. Virol.Home page
E. C. Goodwin, W. J. Atwood, and D. DiMaio
High-Throughput Cell-Based Screen for Chemicals That Inhibit Infection by Simian Virus 40 and Human Polyomaviruses
J. Virol., June 1, 2009; 83(11): 5630 - 5639.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
H. Eriksson, J. Brengdahl, P. Sandstrom, M. Rohman, and B. Becker
Validation of Low-Volume 1536-Well Assay-Ready Compound Plates
J Biomol Screen, June 1, 2009; 14(5): 468 - 475.
[Abstract] [PDF]


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J. Virol.Home page
M. Porotto, G. Orefice, C. C. Yokoyama, B. A. Mungall, R. Realubit, M. L. Sganga, M. Aljofan, M. Whitt, F. Glickman, and A. Moscona
Simulating Henipavirus Multicycle Replication in a Screening Assay Leads to Identification of a Promising Candidate for Therapy
J. Virol., May 15, 2009; 83(10): 5148 - 5155.
[Abstract] [Full Text] [PDF]


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Antimicrob. Agents Chemother.Home page
M. Brickelmaier, A. Lugovskoy, R. Kartikeyan, M. M. Reviriego-Mendoza, N. Allaire, K. Simon, R. J. Frisque, and L. Gorelik
Identification and Characterization of Mefloquine Efficacy against JC Virus In Vitro
Antimicrob. Agents Chemother., May 1, 2009; 53(5): 1840 - 1849.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
E. Pais, J. S. Cambridge, C. S. Johnson, H. J. Meiselman, T. C. Fisher, and T. Alexy
A Novel High-Throughput Screening Assay for Sickle Cell Disease Drug Discovery
J Biomol Screen, April 1, 2009; 14(4): 330 - 336.
[Abstract] [PDF]


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J Biomol ScreenHome page
S. Perspicace, D. Banner, J. Benz, F. Muller, D. Schlatter, and W. Huber
Fragment-Based Screening Using Surface Plasmon Resonance Technology
J Biomol Screen, April 1, 2009; 14(4): 337 - 349.
[Abstract] [PDF]


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J Biomol ScreenHome page
C. Doucette, K. Vedvik, E. Koepnick, A. Bergsma, B. Thomson, and T. C. Turek-Etienne
Kappa Opioid Receptor Screen with the TangoTM {beta}-Arrestin Recruitment Technology and Characterization of Hits with Second-Messenger Assays
J Biomol Screen, April 1, 2009; 14(4): 381 - 394.
[Abstract] [PDF]


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Antimicrob. Agents Chemother.Home page
M. Kolaczkowski, A. Kolaczkowska, N. Motohashi, and K. Michalak
New High-Throughput Screening Assay To Reveal Similarities and Differences in Inhibitory Sensitivities of Multidrug ATP-Binding Cassette Transporters
Antimicrob. Agents Chemother., April 1, 2009; 53(4): 1516 - 1527.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
N. Smotrov, A. Mathur, I. Kariv, C. M. Moxham, and N. Bays
Development of a Cell-Based Assay for Measurement of c-Met Phosphorylation Using AlphaScreenTM Technology and High-Content Imaging Analysis
J Biomol Screen, April 1, 2009; 14(4): 404 - 411.
[Abstract] [PDF]


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J Biomol ScreenHome page
K. Kristan, M. Kotnik, M. Oblak, and U. Urleb
New High-Throughput Fluorimetric Assay for Discovering Inhibitors of UDP-N-Acetylmuramyl-l-Alanine: d-Glutamate (MurD) Ligase
J Biomol Screen, April 1, 2009; 14(4): 412 - 418.
[Abstract] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
A. N. Gerber, K. Masuno, and M. I. Diamond
Discovery of selective glucocorticoid receptor modulators by multiplexed reporter screening
PNAS, March 24, 2009; 106(12): 4929 - 4934.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
P. R. Mallinder, A. V. Wallace, and G. Allenby
Identification of iNOS Inhibitors Using InteraXTM
J Biomol Screen, March 1, 2009; 14(3): 263 - 272.
[Abstract] [PDF]


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BioinformaticsHome page
N. Rieber, B. Knapp, R. Eils, and L. Kaderali
RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
Bioinformatics, March 1, 2009; 25(5): 678 - 679.
[Abstract] [Full Text] [PDF]


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J. Clin. Pathol.Home page
C J Lord, S A Martin, and A Ashworth
RNA interference screening demystified
J. Clin. Pathol., March 1, 2009; 62(3): 195 - 200.
[Abstract] [Full Text] [PDF]


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Molecular Cancer TherapeuticsHome page
A. B. Bialkowska, Y. Du, H. Fu, and V. W. Yang
Identification of novel small-molecule compounds that inhibit the proproliferative Kruppel-like factor 5 in colorectal cancer cells by high-throughput screening
Mol. Cancer Ther., March 1, 2009; 8(3): 563 - 570.
[Abstract] [Full Text] [PDF]


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Antimicrob. Agents Chemother.Home page
N. J. Pan, M. J. Brady, J. M. Leong, and J. D. Goguen
Targeting Type III Secretion in Yersinia pestis
Antimicrob. Agents Chemother., February 1, 2009; 53(2): 385 - 392.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
Jingsong Yang, R. A. Copeland, and Zhihong Lai
Defining Balanced Conditions for Inhibitor Screening Assays That Target Bisubstrate Enzymes
J Biomol Screen, February 1, 2009; 14(2): 111 - 120.
[Abstract] [PDF]


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J Biomol ScreenHome page
C. R. Evelyn, T. Ferng, R. J. Rojas, M. J. Larsen, J. Sondek, and R. R. Neubig
High-Throughput Screening for Small-Molecule Inhibitors of LARG-Stimulated RhoA Nucleotide Binding via a Novel Fluorescence Polarization Assay
J Biomol Screen, February 1, 2009; 14(2): 161 - 172.
[Abstract] [PDF]


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J Biomol ScreenHome page
W. F. Marshall
Quantitative High-Throughput Assays for Flagella-Based Motility in Chlamydomonas Using Plate-Well Image Analysis and Transmission Correlation Spectroscopy
J Biomol Screen, February 1, 2009; 14(2): 133 - 141.
[Abstract] [PDF]


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J Biomol ScreenHome page
M. Harndahl, S. Justesen, K. Lamberth, G. Roder, M. Nielsen, and S. Buus
Peptide Binding to HLA Class I Molecules: Homogenous, High-Throughput Screening, and Affinity Assays
J Biomol Screen, February 1, 2009; 14(2): 173 - 180.
[Abstract] [PDF]


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J Biomol ScreenHome page
C. B. Carlson, M. B. Robers, K. W. Vogel, and T. Machleidt
Development of LanthaScreenTM Cellular Assays for Key Components within the PI3K/AKT/mTOR Pathway
J Biomol Screen, February 1, 2009; 14(2): 121 - 132.
[Abstract] [PDF]


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J Biomol ScreenHome page
L. Peternel, M. Kotnik, A. Prezelj, and U. Urleb
Comparison of 3 Cytotoxicity Screening Assays and Their Application to the Selection of Novel Antibacterial Hits
J Biomol Screen, February 1, 2009; 14(2): 142 - 150.
[Abstract] [PDF]


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J Biomol ScreenHome page
V. Unterreiner, Y. Ibig-Rehm, M. Simonen, H. Gubler, and D. Gabriel
Comparison of Variability and Sensitivity between Nuclear Translocation and Luciferase Reporter Gene Assays
J Biomol Screen, January 1, 2009; 14(1): 59 - 65.
[Abstract] [PDF]


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Molecular Cancer TherapeuticsHome page
C. Marchand, W. A. Lea, A. Jadhav, T. S. Dexheimer, C. P. Austin, J. Inglese, Y. Pommier, and A. Simeonov
Identification of phosphotyrosine mimetic inhibitors of human tyrosyl-DNA phosphodiesterase I by a novel AlphaScreen high-throughput assay
Mol. Cancer Ther., January 1, 2009; 8(1): 240 - 248.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
V. Patel, M. Booker, M. Kramer, L. Ross, C. A. Celatka, L. M. Kennedy, J. D. Dvorin, M. T. Duraisingh, P. Sliz, D. F. Wirth, et al.
Identification and Characterization of Small Molecule Inhibitors of Plasmodium falciparum Dihydroorotate Dehydrogenase
J. Biol. Chem., December 12, 2008; 283(50): 35078 - 35085.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
A. E. Grzegorzewicz, Y. Ma, V. Jones, D. Crick, A. Liav, and M. R. McNeil
Development of a microtitre plate-based assay for lipid-linked glycosyltransferase products using the mycobacterial cell wall rhamnosyltransferase WbbL
Microbiology, December 1, 2008; 154(12): 3724 - 3730.
[Abstract] [Full Text] [PDF]


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CVIHome page
G. Li Pira, F. Ivaldi, C. Dentone, E. Righi, V. Del Bono, C. Viscoli, G. Koopman, and F. Manca
Evaluation of Antigen-Specific T-Cell Responses with a Miniaturized and Automated Method
Clin. Vaccine Immunol., December 1, 2008; 15(12): 1811 - 1818.
[Abstract] [Full Text] [PDF]


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J Biomol ScreenHome page
M. M.C. van Der Lee, M. Bras, C. J. van Koppen, and G. J.R. Zaman
{beta}-Arrestin Recruitment Assay for the Identification of Agonists of the Sphingosine 1-Phosphate Receptor EDG1
J Biomol Screen, December 1, 2008; 13(10): 986 - 998.
[Abstract] [PDF]


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J Biomol ScreenHome page
D. Patnaik, Jun Xian, M. A. Glicksman, G. D. Cuny, R. L. Stein, and J. M.G. Higgins
Identification of Small Molecule Inhibitors of the Mitotic Kinase Haspin by High-Throughput Screening Using a Homogeneous Time-Resolved Fluorescence Resonance Energy Transfer Assay
J Biomol Screen, December 1, 2008; 13(10): 1025 - 1034.
[Abstract] [PDF]


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J Biomol ScreenHome page
R. Rathore, J. Corr, G. Scott, P. Vollmerhaus, and K. D. Greis
Development of an Inhibitor Screening Platform via Mass Spectrometry
J Biomol Screen, December 1, 2008; 13(10): 1007 - 1013.
[Abstract] [PDF]


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Mol. Pharmacol.Home page
M. Rieck, W. Meissner, S. Ries, S. Muller-Brusselbach, and R. Muller
Ligand-Mediated Regulation of Peroxisome Proliferator-Activated Receptor (PPAR) {beta}/{delta}: A Comparative Analysis of PPAR-Selective Agonists and All-trans Retinoic Acid
Mol. Pharmacol., November 1, 2008; 74(5): 1269 - 1277.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
K. Jayathilaka, S. D. Sheridan, T. D. Bold, K. Bochenska, H. L. Logan, R. R. Weichselbaum, D. K. Bishop, and P. P. Connell
A chemical compound that stimulates the human homologous recombination protein RAD51
PNAS, October 14, 2008; 105(41): 15848 - 15853.
[Abstract] [Full Text] [PDF]