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A Simple Statistical Parameter for Use in Evaluation and Validation of High Throughput Screening Assays
Ji-Hu Zhang
DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware
Thomas D. Y. Chung
DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware
Kevin R. Oldenburg
DuPont Pharmaceuticals Research Laboratories, Leads Discovery, DuPont Pharmaceuticals Company, Wilmington, Delaware
The ability to identify active compounds ("hits") from large chemical libraries accurately and rapidly has been the ultimate goal in developing high-throughput screening (HTS) assays. The ability to identify hits from a particular HTS assay depends largely on the suitability or quality of the assay used in the screening. The criteria or parameters for evaluating the "suitability" of an HTS assay for hit identification are not well defined and hence it still remains difficult to compare the quality of assays directly. In this report, a screening window coefficient, called "Z- factor," is defined. This coefficient is reflective of both the assay signal dynamic range and the data variation associated with the signal measurements, and therefore is suitable for assay quality assessment. The Z-factor is a dimensionless, simple statistical characteristic for each HTS assay. The Z-factor provides a useful tool for comparison and evaluation of the quality of assays, and can be utilized in assay optimization and validation.
Journal of Biomolecular Screening, Vol. 4, No. 2,
67-73 (1999)
DOI: 10.1177/108705719900400206

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G. J. Crowther, A. J. Napuli, A. P. Thomas, D. J. Chung, K. V. Kovzun, D. J. Leibly, L. J. Castaneda, J. Bhandari, C. J. Damman, R. Hui, et al.
Buffer Optimization of Thermal Melt Assays of Plasmodium Proteins for Detection of Small-Molecule Ligands
J Biomol Screen,
July 1, 2009;
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700 - 707.
[Abstract]
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S. M. Sukumaran, B. Potsaid, M.-Y. Lee, D. S. Clark, and J. S. Dordick
Development of a Fluorescence-Based, Ultra High-Throughput Screening Platform for Nanoliter-Scale Cytochrome P450 Microarrays
J Biomol Screen,
July 1, 2009;
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668 - 678.
[Abstract]
[PDF]
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M.-T. Gutierrez-Lugo, H. Baker, J. Shiloach, H. Boshoff, and C. A. Bewley
Dequalinium, a New Inhibitor of Mycobacterium tuberculosis Mycothiol Ligase Identified by High-Throughput Screening
J Biomol Screen,
July 1, 2009;
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643 - 652.
[Abstract]
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S. Ziegler, B. Kronenberger, B. A.-M. Albrecht, A. Kaul, A.-L. Gamer, C. D. Klein, and R. W. Hartmann
Development and Evaluation of a FACS-Based Medium-Throughput Assay for HCV Entry Inhibitors
J Biomol Screen,
July 1, 2009;
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620 - 626.
[Abstract]
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D. L. Roman, S. Ota, and R. R. Neubig
Polyplexed Flow Cytometry Protein Interaction Assay: A Novel High-Throughput Screening Paradigm for RGS Protein Inhibitors
J Biomol Screen,
July 1, 2009;
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610 - 619.
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T. Komiyama, J. M. Coppola, M. J. Larsen, M. E. van Dort, B. D. Ross, R. Day, A. Rehemtulla, and R. S. Fuller
Inhibition of Furin/Proprotein Convertase-catalyzed Surface and Intracellular Processing by Small Molecules
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June 5, 2009;
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[Abstract]
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M. A. Rush, M. L. Baniecki, R. Mazitschek, J. F. Cortese, R. Wiegand, J. Clardy, and D. F. Wirth
Colorimetric High-Throughput Screen for Detection of Heme Crystallization Inhibitors
Antimicrob. Agents Chemother.,
June 1, 2009;
53(6):
2564 - 2568.
[Abstract]
[Full Text]
[PDF]
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M. P. Pereira, J. E. Blanchard, C. Murphy, S. L. Roderick, and E. D. Brown
High-Throughput Screening Identifies Novel Inhibitors of the Acetyltransferase Activity of Escherichia coli GlmU
Antimicrob. Agents Chemother.,
June 1, 2009;
53(6):
2306 - 2311.
[Abstract]
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[PDF]
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L. Cai, E. Balogh, and M. Gochin
Stable Extended Human Immunodeficiency Virus Type 1 gp41 Coiled Coil as an Effective Target in an Assay for High-Affinity Fusion Inhibitors
Antimicrob. Agents Chemother.,
June 1, 2009;
53(6):
2444 - 2449.
[Abstract]
[Full Text]
[PDF]
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E. C. Goodwin, W. J. Atwood, and D. DiMaio
High-Throughput Cell-Based Screen for Chemicals That Inhibit Infection by Simian Virus 40 and Human Polyomaviruses
J. Virol.,
June 1, 2009;
83(11):
5630 - 5639.
[Abstract]
[Full Text]
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H. Eriksson, J. Brengdahl, P. Sandstrom, M. Rohman, and B. Becker
Validation of Low-Volume 1536-Well Assay-Ready Compound Plates
J Biomol Screen,
June 1, 2009;
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468 - 475.
[Abstract]
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M. Porotto, G. Orefice, C. C. Yokoyama, B. A. Mungall, R. Realubit, M. L. Sganga, M. Aljofan, M. Whitt, F. Glickman, and A. Moscona
Simulating Henipavirus Multicycle Replication in a Screening Assay Leads to Identification of a Promising Candidate for Therapy
J. Virol.,
May 15, 2009;
83(10):
5148 - 5155.
[Abstract]
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M. Brickelmaier, A. Lugovskoy, R. Kartikeyan, M. M. Reviriego-Mendoza, N. Allaire, K. Simon, R. J. Frisque, and L. Gorelik
Identification and Characterization of Mefloquine Efficacy against JC Virus In Vitro
Antimicrob. Agents Chemother.,
May 1, 2009;
53(5):
1840 - 1849.
[Abstract]
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E. Pais, J. S. Cambridge, C. S. Johnson, H. J. Meiselman, T. C. Fisher, and T. Alexy
A Novel High-Throughput Screening Assay for Sickle Cell Disease Drug Discovery
J Biomol Screen,
April 1, 2009;
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330 - 336.
[Abstract]
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S. Perspicace, D. Banner, J. Benz, F. Muller, D. Schlatter, and W. Huber
Fragment-Based Screening Using Surface Plasmon Resonance Technology
J Biomol Screen,
April 1, 2009;
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[Abstract]
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C. Doucette, K. Vedvik, E. Koepnick, A. Bergsma, B. Thomson, and T. C. Turek-Etienne
Kappa Opioid Receptor Screen with the TangoTM {beta}-Arrestin Recruitment Technology and Characterization of Hits with Second-Messenger Assays
J Biomol Screen,
April 1, 2009;
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[Abstract]
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M. Kolaczkowski, A. Kolaczkowska, N. Motohashi, and K. Michalak
New High-Throughput Screening Assay To Reveal Similarities and Differences in Inhibitory Sensitivities of Multidrug ATP-Binding Cassette Transporters
Antimicrob. Agents Chemother.,
April 1, 2009;
53(4):
1516 - 1527.
[Abstract]
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N. Smotrov, A. Mathur, I. Kariv, C. M. Moxham, and N. Bays
Development of a Cell-Based Assay for Measurement of c-Met Phosphorylation Using AlphaScreenTM Technology and High-Content Imaging Analysis
J Biomol Screen,
April 1, 2009;
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404 - 411.
[Abstract]
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K. Kristan, M. Kotnik, M. Oblak, and U. Urleb
New High-Throughput Fluorimetric Assay for Discovering Inhibitors of UDP-N-Acetylmuramyl-l-Alanine: d-Glutamate (MurD) Ligase
J Biomol Screen,
April 1, 2009;
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412 - 418.
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A. N. Gerber, K. Masuno, and M. I. Diamond
Discovery of selective glucocorticoid receptor modulators by multiplexed reporter screening
PNAS,
March 24, 2009;
106(12):
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[Abstract]
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P. R. Mallinder, A. V. Wallace, and G. Allenby
Identification of iNOS Inhibitors Using InteraXTM
J Biomol Screen,
March 1, 2009;
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N. Rieber, B. Knapp, R. Eils, and L. Kaderali
RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
Bioinformatics,
March 1, 2009;
25(5):
678 - 679.
[Abstract]
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C J Lord, S A Martin, and A Ashworth
RNA interference screening demystified
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March 1, 2009;
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A. B. Bialkowska, Y. Du, H. Fu, and V. W. Yang
Identification of novel small-molecule compounds that inhibit the proproliferative Kruppel-like factor 5 in colorectal cancer cells by high-throughput screening
Mol. Cancer Ther.,
March 1, 2009;
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[Abstract]
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N. J. Pan, M. J. Brady, J. M. Leong, and J. D. Goguen
Targeting Type III Secretion in Yersinia pestis
Antimicrob. Agents Chemother.,
February 1, 2009;
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[Abstract]
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Jingsong Yang, R. A. Copeland, and Zhihong Lai
Defining Balanced Conditions for Inhibitor Screening Assays That Target Bisubstrate Enzymes
J Biomol Screen,
February 1, 2009;
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111 - 120.
[Abstract]
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C. R. Evelyn, T. Ferng, R. J. Rojas, M. J. Larsen, J. Sondek, and R. R. Neubig
High-Throughput Screening for Small-Molecule Inhibitors of LARG-Stimulated RhoA Nucleotide Binding via a Novel Fluorescence Polarization Assay
J Biomol Screen,
February 1, 2009;
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161 - 172.
[Abstract]
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W. F. Marshall
Quantitative High-Throughput Assays for Flagella-Based Motility in Chlamydomonas Using Plate-Well Image Analysis and Transmission Correlation Spectroscopy
J Biomol Screen,
February 1, 2009;
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133 - 141.
[Abstract]
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M. Harndahl, S. Justesen, K. Lamberth, G. Roder, M. Nielsen, and S. Buus
Peptide Binding to HLA Class I Molecules: Homogenous, High-Throughput Screening, and Affinity Assays
J Biomol Screen,
February 1, 2009;
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173 - 180.
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C. B. Carlson, M. B. Robers, K. W. Vogel, and T. Machleidt
Development of LanthaScreenTM Cellular Assays for Key Components within the PI3K/AKT/mTOR Pathway
J Biomol Screen,
February 1, 2009;
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121 - 132.
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L. Peternel, M. Kotnik, A. Prezelj, and U. Urleb
Comparison of 3 Cytotoxicity Screening Assays and Their Application to the Selection of Novel Antibacterial Hits
J Biomol Screen,
February 1, 2009;
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[Abstract]
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V. Unterreiner, Y. Ibig-Rehm, M. Simonen, H. Gubler, and D. Gabriel
Comparison of Variability and Sensitivity between Nuclear Translocation and Luciferase Reporter Gene Assays
J Biomol Screen,
January 1, 2009;
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59 - 65.
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C. Marchand, W. A. Lea, A. Jadhav, T. S. Dexheimer, C. P. Austin, J. Inglese, Y. Pommier, and A. Simeonov
Identification of phosphotyrosine mimetic inhibitors of human tyrosyl-DNA phosphodiesterase I by a novel AlphaScreen high-throughput assay
Mol. Cancer Ther.,
January 1, 2009;
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240 - 248.
[Abstract]
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V. Patel, M. Booker, M. Kramer, L. Ross, C. A. Celatka, L. M. Kennedy, J. D. Dvorin, M. T. Duraisingh, P. Sliz, D. F. Wirth, et al.
Identification and Characterization of Small Molecule Inhibitors of Plasmodium falciparum Dihydroorotate Dehydrogenase
J. Biol. Chem.,
December 12, 2008;
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[Abstract]
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A. E. Grzegorzewicz, Y. Ma, V. Jones, D. Crick, A. Liav, and M. R. McNeil
Development of a microtitre plate-based assay for lipid-linked glycosyltransferase products using the mycobacterial cell wall rhamnosyltransferase WbbL
Microbiology,
December 1, 2008;
154(12):
3724 - 3730.
[Abstract]
[Full Text]
[PDF]
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G. Li Pira, F. Ivaldi, C. Dentone, E. Righi, V. Del Bono, C. Viscoli, G. Koopman, and F. Manca
Evaluation of Antigen-Specific T-Cell Responses with a Miniaturized and Automated Method
Clin. Vaccine Immunol.,
December 1, 2008;
15(12):
1811 - 1818.
[Abstract]
[Full Text]
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M. M.C. van Der Lee, M. Bras, C. J. van Koppen, and G. J.R. Zaman
{beta}-Arrestin Recruitment Assay for the Identification of Agonists of the Sphingosine 1-Phosphate Receptor EDG1
J Biomol Screen,
December 1, 2008;
13(10):
986 - 998.
[Abstract]
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D. Patnaik, Jun Xian, M. A. Glicksman, G. D. Cuny, R. L. Stein, and J. M.G. Higgins
Identification of Small Molecule Inhibitors of the Mitotic Kinase Haspin by High-Throughput Screening Using a Homogeneous Time-Resolved Fluorescence Resonance Energy Transfer Assay
J Biomol Screen,
December 1, 2008;
13(10):
1025 - 1034.
[Abstract]
[PDF]
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R. Rathore, J. Corr, G. Scott, P. Vollmerhaus, and K. D. Greis
Development of an Inhibitor Screening Platform via Mass Spectrometry
J Biomol Screen,
December 1, 2008;
13(10):
1007 - 1013.
[Abstract]
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M. Rieck, W. Meissner, S. Ries, S. Muller-Brusselbach, and R. Muller
Ligand-Mediated Regulation of Peroxisome Proliferator-Activated Receptor (PPAR) {beta}/{delta}: A Comparative Analysis of PPAR-Selective Agonists and All-trans Retinoic Acid
Mol. Pharmacol.,
November 1, 2008;
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[Abstract]
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K. Jayathilaka, S. D. Sheridan, T. D. Bold, K. Bochenska, H. L. Logan, R. R. Weichselbaum, D. K. Bishop, and P. P. Connell
A chemical compound that stimulates the human homologous recombination protein RAD51
PNAS,
October 14, 2008;
105(41):
15848 - 15853.
[Abstract]
[Full Text]
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