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Journal of Biomolecular Screening
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High-Throughput, Cell-Free, Liposome-Based Approach for Assessing In Vitro Activity of Lipid Kinases

Douglas J. Demian

Research Technology Center, Pfizer, Inc., Cambridge, Massachusetts

Susan L. Clugston

Research Technology Center, Pfizer, Inc., Cambridge, Massachusetts

Meta M. Foster

Research Technology Center, Pfizer, Inc., Cambridge, Massachusetts

Lucia Rameh

Boston Biomedical Research Institute, Watertown, Massachusetts

Deborah Sarkes

Boston Biomedical Research Institute, Watertown, Massachusetts

Sharon A. Townson

Research Technology Center, Pfizer, Inc., Cambridge, Massachusetts

Lily Yang

Research Technology Center, Pfizer, Inc., Cambridge, Massachusetts

Melvin Zhang

Research Technology Center, Pfizer, Inc., Cambridge, Massachusetts

Maura E. Charlton

Research Technology Center, Pfizer, Inc., Cambridge, Massachusetts, maura.e.charlton{at}pfizer.com

Lipid kinases are central players in lipid signaling pathways involved in inflammation, tumorigenesis, and metabolic syndrome. A number of these kinase targets have proven difficult to investigate in higher throughput cell-free assay systems. This challenge is partially due to specific substrate interaction requirements for several of the lipid kinase family members and the resulting incompatibility of these substrates with most established, homogeneous assay formats. Traditional, cell-free in vitro investigational methods for members of the lipid kinase family typically involve substrate incorporation of [{gamma}-32P] and resolution of signal by thin-layer chromatography (TLC) and autoradiograph densitometry. This approach, although highly sensitive, does not lend itself to high-throughput testing of large numbers of small molecules (100 s to 1 MM+). The authors present the development and implementation of a fully synthetic, liposome-based assay for assessing in vitro activity of phosphatidylinositol-5-phosphate-4-kinase isoforms (PIP4KIIβ and {alpha}) in 2 commonly used homogeneous technologies. They have validated these assays through compound testing in both traditional TLC and radioactive filterplate approaches as well as binding validation using isothermic calorimetry. A directed library representing known kinase pharmacophores was screened against type IIβ phosphatidylinositol-phosphate kinase (PIPK) to identify small-molecule inhibitors. This assay system can be applied to other types and isoforms of PIPKs as well as a variety of other lipid kinase targets. (Journal of Biomolecular Screening 2009:838-844)

Key Words: lipid kinase • PIP4KIIβ • liposome • luminescence • fluorescent polarization

This version was published on August 1, 2009

Journal of Biomolecular Screening, Vol. 14, No. 7, 838-844 (2009)
DOI: 10.1177/1087057109339205


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