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This version was published on June 1, 2006
Journal of Biomolecular Screening, Vol. 11, No. 4, 369-376 (2006)
DOI: 10.1177/1087057106286654

Cell-Based Screening and Validation of Human Novel Genes Associated with Cell Viability

Lan Wang

Chinese National Human Genome Center, Beijing, China, Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

Xia Gao

Chinese National Human Genome Center, Beijing, China

Peng Gao

Chinese National Human Genome Center, Beijing, China

Weiwei Deng

Chinese National Human Genome Center, Beijing, China

Peng Yu

Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

Jinjing Ma

Chinese National Human Genome Center, Beijing, China

Jinhai Guo

Chinese National Human Genome Center, Beijing, China

Xinyu Wang

Chinese National Human Genome Center, Beijing, China

Hualing Cheng

Chinese National Human Genome Center, Beijing, China

Chenying Zhang

Chinese National Human Genome Center, Beijing, China

Chuanfei Yu

Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

Xi Ma

Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

Bingfeng Lv

Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

Yang Lu

Chinese National Human Genome Center, Beijing, China

Taiping Shi

Chinese National Human Genome Center, Beijing, China

Dalong Ma

Chinese National Human Genome Center, Beijing, China, Lab of Medical Immunology, School of Basic Medical Science, Peking University Health Science Center, Beijing, China, Human Disease Genomics Center, Peking University, Beijing, China

In the present study, a cell-based high-throughput assay is established to identify novel human genes associated with cell viability. The assay relies on the down-regulation of Renilla luciferase (pRL) activity in a 96-well format. In addition, 2-color fluorescence probes were used to distinguish living and dead cells. As the positive control, the authors used the expression vectors encoding Bax, TNFRSF1A, and TAJ, which were widely known to effectively induce programmed cell death. They screened 409 novel genes (including alternative mRNA splicing forms) cloned in their laboratory and found that 39 genes could significantly down-regulate pRL activity. A subsequent fluorescence-based assay revealed that 4 of the 39 genes (PIP5KL1, OLFM1, RNF122, FAM26B) were associated with cell viability. Further function assays validated that the 4 genes were able to induce both necrosis and apoptosis. These results therefore indicate that a rapid and effective screening system has been developed, which should shed light on some functions of novel genes.

Key Words: high-throughput screening • fluorescence • cell viability • novel gene • imaging


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